The Hidden Cost of Outdated HR Processes: How a Human Resource Management System Can Help

by Alexandrea Anderson on February 27, 2025

Outdated HR processes can cost agencies time, money, and employee trust. Learn how an HRIS can streamline record-keeping, payroll, and compliance, saving your HR team valuable time and reducing costly errors.

Article Highlights

The average Human Resources (HR) professional spends about 40% of their workweek completing repetitive administrative tasks. Why does this matter? Because while they’re doing that, they’re not focusing on strategic initiatives that will improve employee engagement and organizational success.

The breakdown is caused by HR inefficiencies and outdated HR processes. Even in 2025, many public sector HR departments still rely on paper forms, spreadsheets, and filing cabinets for their workforce management.

These create inefficiencies and incur hidden costs that don’t stop at finances. They include lost productivity, compliance risks, diminished employee trust, and damaged reputation. Correcting these problems keeps even the best public sector HR teams occupied when they should be working on other things, and the contribution to public sector employee burnout is significant.

But there is a solution.

A modern Human Resource Management System (HRMS) can bring order to the chaos of paper-based systems. These digital solutions improve accuracy, increase efficiency, and make compliance a breeze—without manual tracking or recordkeeping. 

The Chaos of Misfiled Records

The Problem: Paper Records Are Prone to Errors and Security Risks

Paper records are a time bomb for HR departments. Physical documentation might seem more reliable than digital recordkeeping—but offline-only copies open public agencies up to information breaches, lost documentation, misfiled information, compliance violations, and more, and they come with hidden costs.

The Hidden Costs: Productivity, Legal Risks, and Employee Turnover

Paper-based HR processes stick around because many government agencies have a sense of how things have always been done and how those things should be maintained. But on further examination, it becomes clear that paper-based systems exacerbate inefficiencies and cause problems that Human Resource Management Systems can help agencies avoid. These are:

  • Wasted Hours. HR teams waste valuable time correcting errors and searching for documents in paper-based HR systems. This is because paper files are:
    • Harder to track and retrieve than digital files.
    • Easily lost and not easily recovered.
    • Easy to damage and destroy.
  • Compliance Violations. Outdated HR processes can also lead to the following compliance violations, which pose legal risks and incur expensive fines:
    • Exposed personally identifiable information (PII)
    • Payroll mistakes
    • Accidental benefits mismanagement
    • Missing mandatory documents (such as i-9 forms)
  • Employee Frustration. When employees don’t have easy access to their own information, and HR can’t quickly access it on their behalf, employees lose trust and satisfaction. This directly contributes to government employee burnout and turnover. 

While using a paper-based HR system has been the traditional way, there are many more costs and cons than there are positive outcomes when compared to using a digital Human Resource Management System. Take this example.

A Real-World Example

A municipal Human Resources Department overseeing 5,000+ employees, including public safety, administrative, and public works staff, has always relied on paper-based HR processes. But during peak times, managing physical files and manually tracking deadlines led to misplaced forms and processing delays.

In one instance, a police officer experienced a delay in enrolling their family in the city’s health insurance plan. When a medical emergency arose, the officer discovered that their coverage had not been activated due to missing paperwork. The situation led to a formal grievance and required the city to cover out-of-pocket medical expenses.

To address these issues, the department implemented a digital Human Resources Management System that automated benefits enrollment, maintained digital records, and sent automatic compliance reminders. Within a year, benefits processing times dropped by 50% and compliance risks decreased while employee satisfaction and HR productivity improved as staff shifted focus to strategic initiatives.

The Solution: A Centralized Digital HR System

A centralized digital Human Resource Management System streamlines administrative tasks, reduces compliance risks, and improves overall efficiency. The best systems will offer a cloud-based, encrypted storage solution with access controls in which documents are easily searchable and don’t get lost or breached.

By automating repetitive processes and offering secure, easy access to employee information, an HRMS frees up HR professionals to focus on strategic priorities that drive organizational success instead of tedious paperwork. For public sector agencies, this transformation enhances productivity and encourages a more engaged, satisfied workforce—ultimately helping agencies better serve their communities.

Payroll Mistakes: The Costly Errors That Hurt Employees and Organizations

 

The Problem: Manual Payroll Processing Leaves Too Much Room for Error

Payroll is complex—especially in the public sector where regulations, collective bargaining agreements, varying pay scales, and compliance requirements add layers of complexity to processing accurate on-time payments.

Doing that work manually on paper is asking for expensive mistakes, even for talented HR teams. What are the real costs of those mistakes?


The Hidden Costs: Financial and Reputational Risks

  • Financial Penalties: The IRS issued $6 billion in employer penalties due to payroll errors in 2022 alone.
  • Time Wasted on Corrections: Instead of focusing on strategy, HR teams spend time fixing preventable mistakes.
  • Employee Disengagement: Late or incorrect paychecks damage trust and morale, contributing to public sector employee burnout and turnover.
  • Turnover Costs: When payroll errors drive employee dissatisfaction, turnover rates can increase, leading to costly recruitment and training needs.

A Real-World Example

A mid-sized city government employing over 3,000 staff members struggled with overtime calculations due to its manual, spreadsheet-based tracking system. Payroll staff had to cross-reference timecards, department logs, and union agreements by hand, which was both time-consuming and prone to human error.

These inaccuracies led to employees being underpaid or overpaid, fueling frustration among the workforce. Several unions filed grievances, and the city faced costly penalties and legal battles that strained its budget and eroded trust with employees.

To resolve these issues, the city adopted an automated workforce management system that integrated timekeeping, payroll, and compliance checks. The new system ensured accurate overtime calculations according to union contracts and labor laws. Within six months, payroll errors decreased by 80%, the legal disputes were resolved, and employee morale improved with restored trust in the payroll process.

The Solution: Automated Payroll Processing

An HRMS with payroll automation can integrate with time and attendance systems to streamline payroll processes and solve manual payroll issues.

The best systems have features like automated tax calculations and employee self-service portals to improve accuracy and efficiency—which also reduces the burden on HR teams. Automated systems also adapt quickly to changing tax laws, helping organizations remain compliant without the need for manual updates.

Compliance Risks: The Silent Threat to Public Sector HR

The Problem: Paper-Based Compliance Tracking Is a Liability

In the public sector, employment regulations can change quickly, and keeping up using manual HR processes is nearly impossible. Understandably, HR teams that rely on paper-based systems often struggle to maintain accurate and complete records—which can be costly.

The Hidden Costs: Legal Fines, Lawsuits, and Reputational Damage

  • Non-Compliance Fines: Missing documentation for wage reporting or benefits administration can lead to expensive penalties.
  • Lawsuit Risks: Mishandling employee benefits or failing to comply with labor laws can result in legal actions against public agencies.
  • Reputational Harm: Public sector agencies that face compliance issues can lose the trust of their employees and communities, which reduces their ability to accomplish their mission.
  • Operational Disruption: Non-compliance may lead to audits, investigations, and operational slowdowns that impact overall productivity.

A Real-World Example

A government agency that stored I-9 forms on paper was fined $50,000 when an audit revealed missing and incomplete records. The worst part? This compliance issue and the attached expensive fine was entirely preventable.

If the agency had used a public sector specific HRMS, digital compliance tracking would have ensured that all documents were complete, up-to-date, and easily accessible.

The Solution: Digital Compliance Tracking

HR automation is the clearest way to improve government agency compliance with employment regulation. A modern HRMS can provide audit-ready digital records, secure storage with encryption and access controls, and automated compliance tracking to help organizations avoid fines and maintain a positive reputation.

These systems also offer reporting features that help HR teams prepare for audits proactively, reducing the stress and disruption often associated with compliance checks.

How Automation Gives HR Leaders Back Their Time

  • Efficiency Gains: Automating repetitive tasks like payroll and record management allows HR to focus on strategic priorities.
  • Security: Automated systems provide secure data storage and ensure compliance with data privacy regulations, protecting sensitive employee information.
  • Minimizing Errors: Automation reduces the risk of human error in administrative tasks, improving accuracy and consistency across HR processes.
  • Cost Savings: Digital systems reduce administrative overhead and minimize compliance risks.
  • Employee Experience: Self-service portals empower employees to access information quickly, improving satisfaction.
  • Scalability: A robust HRMS grows with the organization, keeping processes efficient even as needs evolve.
  • Enhanced Reporting: Digital systems provide real-time analytics on workforce metrics, helping HR leaders make data-driven decisions and anticipate future needs.
  • Improved Collaboration: With centralized data, cross-functional teams can work together more efficiently, enhancing productivity across the organization.
  • Strategic Impact: Freeing HR from administrative burdens enables them to contribute more meaningfully to organizational growth and employee development.

It's Time to Modernize HR

Outdated HR processes create unnecessary chaos within public agencies. Misfiled and lost records, information breaches, payroll errors, and compliance violations are inconvenient wastes of time—and they are also real threats to an organization's stability.

As these issues pile up, they can lead to disengaged employees, costly legal battles, and delays in essential services—as well as significant damage to the organization’s reputation in the community. Worse still, the longer these inefficiencies persist, the more challenging it becomes to maintain public trust and meet organizational goals.

Luckily, the solution is clear.

Implement a Human Resource Management System in a strategic move that eliminates these problems. Who benefits? Anyone with a paper-based HR system—but especially government agencies and public sector organizations adopting a purpose-built HRMS to address their unique challenges.

By reducing HR inefficiencies and minimizing errors and risk, a modern HRMS will empower public sector HR professionals to focus on what matters most: people.

Ready to transform your HR processes from outdated to super-efficient? Learn how to choose a modern HR solution that can bring order to your organization and set your team up for success. For an in-depth look at NEOGOV's HRIS software that was purpose-built for public sector agencies, contact us today!

Alexandrea Anderson

Alexandrea Anderson is a Product Marketing Manager at NEOGOV, overseeing communications and strategy for the Talent Acquisition suite of products.

Related Articles